DUNE-FEM (unstable)
bcrsmatrix.hh
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1// SPDX-FileCopyrightText: Copyright © DUNE Project contributors, see file LICENSE.md in module root
176 DUNE_THROW(BCRSMatrixError,"You can only create an ImplicitBuilder for a matrix in implicit build mode");
178 DUNE_THROW(BCRSMatrixError,"You can only create an ImplicitBuilder for a matrix with set size that has not been compressed() yet");
196 ImplicitMatrixBuilder(Matrix& m, size_type rows, size_type cols, size_type avg_cols_per_row, double overflow_fraction)
200 DUNE_THROW(BCRSMatrixError,"You can only set up a matrix for this ImplicitBuilder if it has no memory allocated yet");
485 };
542 };
551 DUNE_THROW(BCRSMatrixError,"You cannot use operator[] in implicit build mode before calling compress()");
563 DUNE_THROW(BCRSMatrixError,"You cannot use operator[] in implicit build mode before calling compress()");
783 BCRSMatrix (size_type _n, size_type _m, size_type _avg, double compressionBufferSize, BuildMode bm)
810 DUNE_THROW(InvalidStateException,"BCRSMatrix can only be copy-constructed when source matrix is completely empty (size not set) or fully built)");
839 if (ready == building && (build_mode == unknown || build_mode == random || build_mode == row_wise) && (bm == row_wise || bm == random))
842 DUNE_THROW(InvalidStateException, "Matrix structure cannot be changed at this stage anymore (ready == "<<ready<<").");
868 DUNE_THROW(Dune::BCRSMatrixError,"number of non-zeroes may not be set in implicit mode, use setImplicitBuildModeParameters() instead");
899 DUNE_THROW(InvalidStateException,"You cannot modify build mode parameters at this stage anymore");
915 if (!((ready == notAllocated || ready == built) && (Mat.ready == notAllocated || Mat.ready == built)))
916 DUNE_THROW(InvalidStateException,"BCRSMatrix can only be copied when both target and source are empty or fully built)");
970 DUNE_THROW(BCRSMatrixError,"creation only allowed if row wise allocation was requested in the constructor");
1294 dwarn << "WARNING: size of row "<< i.index()<<" is "<<j.offset()<<". But was specified as being "<< (*i).end().offset()
1295 <<". This means you are wasting valuable space and creating additional cache misses!"<<std::endl;
1397 DUNE_THROW(InvalidStateException,"You may only call compress() at the end of the 'building' stage");
1429 std::sort(perm.begin(),perm.end(), [](const size_type* l, const size_type* r){ return *l < *r; });
1444 "Please increase either the average number of entries per row or the compressionBufferSize value."
1459 "Please increase either the average number of entries per row or the compressionBufferSize value."
1477 "Please increase either the average number of entries per row or the compressionBufferSize value."
1524 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1552 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1585 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1607 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1632 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1652 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1678 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1701 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1724 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1747 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1762 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1806 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1829 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1852 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1875 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1900 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1923 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1943 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1963 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1986 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
2024 nnz_ = std::accumulate( begin(), end(), size_type( 0 ), [] ( size_type s, const row_type &row ) { return s+row.getsize(); } );
2062 size_type allocationSize_; //allocated size of a and j arrays, except in implicit mode: nnz_==allocationsSize_
2085 // NOTE: If the original allocator A is stateful, the rebound allocators will share the same state as A, as they are rebound from A.
2086 using block_allocator_t = typename std::allocator_traits<A>::template rebind_alloc<block_type>;
2248 void allocate(size_type rows, size_type columns, size_type allocationSize, bool allocateRows, bool allocate_data)
2261 DUNE_THROW(InvalidStateException,"Rows have already been allocated, cannot allocate a second time");
2315 DUNE_THROW(InvalidStateException,"implicit_allocate() may only be called in implicit build mode");
2321 DUNE_THROW(InvalidStateException,"You have to set the implicit build mode parameters before starting to build the matrix");
Helper functions for determining the vector/matrix block level.
This file implements a vector space as a tensor product of a given vector space. The number of compon...
Iterator class for sequential creation of blocks
Definition: bcrsmatrix.hh:957
bool operator==(const CreateIterator &it) const
equality
Definition: bcrsmatrix.hh:1056
CreateIterator & operator++()
prefix increment
Definition: bcrsmatrix.hh:977
size_type index() const
The number of the row that the iterator currently points to.
Definition: bcrsmatrix.hh:1062
bool operator!=(const CreateIterator &it) const
inequality
Definition: bcrsmatrix.hh:1050
CreateIterator(BCRSMatrix &_Mat, size_type _i)
constructor
Definition: bcrsmatrix.hh:960
void insert(size_type j)
put column index in row
Definition: bcrsmatrix.hh:1068
bool contains(size_type j)
return true if column index is in row
Definition: bcrsmatrix.hh:1074
size_type size() const
Get the current row size.
Definition: bcrsmatrix.hh:1083
RealRowIterator()
empty constructor, use with care!
Definition: bcrsmatrix.hh:594
bool equals(const RealRowIterator< ValueType > &other) const
equality
Definition: bcrsmatrix.hh:622
std::remove_const< T >::type ValueType
The unqualified value type.
Definition: bcrsmatrix.hh:581
bool equals(const RealRowIterator< const ValueType > &other) const
equality
Definition: bcrsmatrix.hh:629
RealRowIterator(row_type *_p, size_type _i)
constructor
Definition: bcrsmatrix.hh:589
size_type index() const
return index
Definition: bcrsmatrix.hh:604
typename Imp::BlockTraits< B >::field_type field_type
export the type representing the field
Definition: bcrsmatrix.hh:490
bool exists(size_type i, size_type j) const
return true if (i,j) is in pattern
Definition: bcrsmatrix.hh:2043
BuildStage buildStage() const
The current build stage of the matrix.
Definition: bcrsmatrix.hh:2029
friend class CreateIterator
allow CreateIterator to access internal data
Definition: bcrsmatrix.hh:1098
void copyWindowStructure(const BCRSMatrix &Mat)
Copy the window structure from another matrix.
Definition: bcrsmatrix.hh:2160
B & entry(size_type row, size_type col)
Returns reference to entry (row,col) of the matrix.
Definition: bcrsmatrix.hh:1324
void usmhv(const field_type &alpha, const X &x, Y &y) const
y += alpha A^H x
Definition: bcrsmatrix.hh:1871
RealRowIterator< const row_type > const_iterator
The const iterator over the matrix rows.
Definition: bcrsmatrix.hh:705
std::allocator_traits< A >::size_type size_type
The type for the index access and the size.
Definition: bcrsmatrix.hh:496
void allocate(size_type rows, size_type columns, size_type allocationSize, bool allocateRows, bool allocate_data)
Allocate memory for the matrix structure.
Definition: bcrsmatrix.hh:2248
BCRSMatrix & axpy(field_type alpha, const BCRSMatrix &b)
Add the scaled entries of another matrix to this one.
Definition: bcrsmatrix.hh:1628
FieldTraits< ft >::real_type infinity_norm_real() const
simplified infinity norm (uses Manhattan norm for complex values)
Definition: bcrsmatrix.hh:1941
void deallocate(bool deallocateRows=true)
deallocate memory of the matrix.
Definition: bcrsmatrix.hh:2177
Iterator RowIterator
rename the iterators for easier access
Definition: bcrsmatrix.hh:699
row_type & operator[](size_type i)
random access to the rows
Definition: bcrsmatrix.hh:547
void endrowsizes()
indicate that size of all rows is defined
Definition: bcrsmatrix.hh:1153
void incrementrowsize(size_type i, size_type s=1)
increment size of row i by s (1 by default)
Definition: bcrsmatrix.hh:1142
size_type nonzeroes() const
number of blocks that are stored (the number of blocks that possibly are nonzero)
Definition: bcrsmatrix.hh:2020
ConstIterator ConstRowIterator
rename the const row iterator for easier access
Definition: bcrsmatrix.hh:736
void setIndicesNoSort(size_type row, It begin, It end)
Set all column indices for row from the given iterator range.
Definition: bcrsmatrix.hh:1239
void setrowsize(size_type i, size_type s)
Set number of indices in row i to s.
Definition: bcrsmatrix.hh:1121
BCRSMatrix & operator*=(const field_type &k)
vector space multiplication with scalar
Definition: bcrsmatrix.hh:1520
RealRowIterator< row_type > iterator
The iterator over the (mutable matrix rows.
Definition: bcrsmatrix.hh:669
void usmtv(const field_type &alpha, const X &x, Y &y) const
y += alpha A^T x
Definition: bcrsmatrix.hh:1802
@ implicit
Build entries randomly with an educated guess for the number of entries per row.
Definition: bcrsmatrix.hh:537
BCRSMatrix(size_type _n, size_type _m, size_type _nnz, BuildMode bm)
matrix with known number of nonzeroes
Definition: bcrsmatrix.hh:754
Imp::CompressedBlockVectorWindow< B, size_type > row_type
implement row_type with compressed vector
Definition: bcrsmatrix.hh:499
::Dune::CompressionStatistics< size_type > CompressionStatistics
The type for the statistics object returned by compress()
Definition: bcrsmatrix.hh:505
BCRSMatrix & operator-=(const BCRSMatrix &b)
Subtract the entries of another matrix from this one.
Definition: bcrsmatrix.hh:1603
BCRSMatrix(const BCRSMatrix &Mat)
copy constructor
Definition: bcrsmatrix.hh:804
Iterator end()
Get iterator to one beyond last row.
Definition: bcrsmatrix.hh:679
void setIndices(size_type row, It begin, It end)
Set all column indices for row from the given iterator range.
Definition: bcrsmatrix.hh:1262
void addindex(size_type row, size_type col)
add index (row,col) to the matrix
Definition: bcrsmatrix.hh:1195
row_type::Iterator ColIterator
Iterator for the entries of each row.
Definition: bcrsmatrix.hh:702
FieldTraits< field_type >::real_type frobenius_norm() const
frobenius norm: sqrt(sum over squared values of entries)
Definition: bcrsmatrix.hh:1913
BCRSMatrix & operator/=(const field_type &k)
vector space division by scalar
Definition: bcrsmatrix.hh:1548
BCRSMatrix & operator+=(const BCRSMatrix &b)
Add the entries of another matrix to this one.
Definition: bcrsmatrix.hh:1581
BCRSMatrix(size_type _n, size_type _m, size_type _avg, double compressionBufferSize, BuildMode bm)
construct matrix with a known average number of entries per row
Definition: bcrsmatrix.hh:783
CreateIterator createend()
get create iterator pointing to one after the last block
Definition: bcrsmatrix.hh:1107
FieldTraits< field_type >::real_type frobenius_norm2() const
square of frobenius norm, need for block recursion
Definition: bcrsmatrix.hh:1896
row_type::ConstIterator ConstColIterator
Const iterator to the entries of a row.
Definition: bcrsmatrix.hh:739
void usmv(F &&alpha, const X &x, Y &y) const
y += alpha A x
Definition: bcrsmatrix.hh:1720
size_type getrowsize(size_type i) const
get current number of indices in row i
Definition: bcrsmatrix.hh:1132
size_type M() const
number of columns (counted in blocks)
Definition: bcrsmatrix.hh:2014
CreateIterator createbegin()
get initial create iterator
Definition: bcrsmatrix.hh:1101
@ rowSizesBuilt
The row sizes of the matrix are known.
Definition: bcrsmatrix.hh:482
@ notbuilt
Matrix is not built at all, no memory has been allocated, build mode and size can still be set.
Definition: bcrsmatrix.hh:473
@ notAllocated
Matrix is not built at all, no memory has been allocated, build mode and size can still be set.
Definition: bcrsmatrix.hh:475
@ building
Matrix is currently being built, some memory has been allocated, build mode and size are fixed.
Definition: bcrsmatrix.hh:477
BuildMode buildMode() const
The currently selected build mode of the matrix.
Definition: bcrsmatrix.hh:2035
FieldTraits< ft >::real_type infinity_norm() const
infinity norm (row sum norm, how to generalize for blocks?)
Definition: bcrsmatrix.hh:1921
B block_type
export the type representing the components
Definition: bcrsmatrix.hh:493
void implicit_allocate(size_type _n, size_type _m)
organizes allocation implicit mode calculates correct array size to be allocated and sets the the win...
Definition: bcrsmatrix.hh:2312
void setImplicitBuildModeParameters(size_type _avg, double compressionBufferSize)
Set parameters needed for creation in implicit build mode.
Definition: bcrsmatrix.hh:888
BCRSMatrix(size_type _n, size_type _m, BuildMode bm)
matrix with unknown number of nonzeroes
Definition: bcrsmatrix.hh:763
void endindices()
indicate that all indices are defined, check consistency
Definition: bcrsmatrix.hh:1276
CompressionStatistics compress()
Finishes the buildstage in implicit mode.
Definition: bcrsmatrix.hh:1388
void setDataPointers()
Set data pointers for all rows.
Definition: bcrsmatrix.hh:2141
size_type N() const
number of rows (counted in blocks)
Definition: bcrsmatrix.hh:2008
void setBuildMode(BuildMode bm)
Sets the build mode of the matrix.
Definition: bcrsmatrix.hh:832
void setSize(size_type rows, size_type columns, size_type nnz=0)
Set the size of the matrix.
Definition: bcrsmatrix.hh:860
BCRSMatrix & operator=(const BCRSMatrix &Mat)
assignment
Definition: bcrsmatrix.hh:910
void setColumnPointers(ConstRowIterator row)
Copy row sizes from iterator range starting at row and set column index pointers for all rows.
Definition: bcrsmatrix.hh:2115
ConstIterator end() const
Get const iterator to one beyond last row.
Definition: bcrsmatrix.hh:716
ConstIterator begin() const
Get const iterator to first row.
Definition: bcrsmatrix.hh:710
Proxy row object for entry access.
Definition: bcrsmatrix.hh:139
block_type & operator[](size_type j) const
Returns entry in column j.
Definition: bcrsmatrix.hh:144
A wrapper for uniform access to the BCRSMatrix during and after the build stage in implicit build mod...
Definition: bcrsmatrix.hh:119
Matrix::block_type block_type
The block_type of the underlying matrix.
Definition: bcrsmatrix.hh:127
ImplicitMatrixBuilder(Matrix &m)
Creates an ImplicitMatrixBuilder for matrix m.
Definition: bcrsmatrix.hh:172
ImplicitMatrixBuilder(Matrix &m, size_type rows, size_type cols, size_type avg_cols_per_row, double overflow_fraction)
Sets up matrix m for implicit construction using the given parameters and creates an ImplicitBmatrixu...
Definition: bcrsmatrix.hh:196
size_type M() const
The number of columns in the matrix.
Definition: bcrsmatrix.hh:219
Matrix::size_type size_type
The size_type of the underlying matrix.
Definition: bcrsmatrix.hh:130
row_object operator[](size_type i) const
Returns a proxy for entries in row i.
Definition: bcrsmatrix.hh:207
size_type N() const
The number of rows in the matrix.
Definition: bcrsmatrix.hh:213
Thrown when the compression buffer used by the implicit BCRSMatrix construction is exhausted.
Definition: istlexception.hh:37
Default exception if a function was called while the object is not in a valid state for that function...
Definition: exceptions.hh:375
T block_type
Export the type representing the components.
Definition: matrix.hh:568
Base class for stl conformant forward iterators.
Definition: iteratorfacades.hh:435
Type traits to determine the type of reals (when working with complex numbers)
constexpr auto max
Function object that returns the greater of the given values.
Definition: hybridutilities.hh:489
constexpr decltype(auto) elementAt(Container &&c, Index &&i)
Get element at given position from container.
Definition: hybridutilities.hh:131
constexpr T accumulate(Range &&range, T value, F &&f)
Accumulate values.
Definition: hybridutilities.hh:284
DWarnType dwarn(std::cerr)
Stream for warnings indicating problems.
Definition: stdstreams.hh:162
This file implements iterator facade classes for writing stl conformant iterators.
Some handy generic functions for ISTL matrices.
constexpr std::integral_constant< std::size_t, sizeof...(II)> size(std::integer_sequence< T, II... >)
Return the size of the sequence.
Definition: integersequence.hh:75
constexpr auto get(std::integer_sequence< T, II... >, std::integral_constant< std::size_t, pos >={})
Return the entry at position pos of the given sequence.
Definition: integersequence.hh:22
Implements a scalar matrix view wrapper around an existing scalar.
Implements a scalar vector view wrapper around an existing scalar.
Standard Dune debug streams.
Statistics about compression achieved in implicit mode.
Definition: bcrsmatrix.hh:90
size_type overflow_total
total number of elements written to the overflow area during construction.
Definition: bcrsmatrix.hh:96
size_type maximum
maximum number of non-zeroes per row.
Definition: bcrsmatrix.hh:94
double avg
average number of non-zeroes per row.
Definition: bcrsmatrix.hh:92
double mem_ratio
fraction of wasted memory resulting from non-used overflow area.
Definition: bcrsmatrix.hh:101
Traits for type conversions and type information.
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