Dune Core Modules (2.7.1)

matrixredistribute.hh
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1 // -*- tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 2 -*-
2 // vi: set et ts=4 sw=2 sts=2:
3 #ifndef DUNE_ISTL_MATRIXREDISTRIBUTE_HH
4 #define DUNE_ISTL_MATRIXREDISTRIBUTE_HH
5 #include <memory>
6 #include "repartition.hh"
9 #include <dune/common/unused.hh>
11 #include <dune/istl/paamg/pinfo.hh>
17 namespace Dune
18 {
19  template<typename T>
20  struct RedistributeInformation
21  {
22  bool isSetup() const
23  {
24  return false;
25  }
26  template<class D>
27  void redistribute(const D& from, D& to) const
28  {
31  }
32 
33  template<class D>
34  void redistributeBackward(D& from, const D& to) const
35  {
38  }
39 
40  void resetSetup()
41  {}
42 
43  void setNoRows(std::size_t size)
44  {
46  }
47 
48  void setNoCopyRows(std::size_t size)
49  {
51  }
52 
53  void setNoBackwardsCopyRows(std::size_t size)
54  {
56  }
57 
58  std::size_t getRowSize(std::size_t index) const
59  {
60  DUNE_UNUSED_PARAMETER(index);
61  return -1;
62  }
63 
64  std::size_t getCopyRowSize(std::size_t index) const
65  {
66  DUNE_UNUSED_PARAMETER(index);
67  return -1;
68  }
69 
70  std::size_t getBackwardsCopyRowSize(std::size_t index) const
71  {
72  DUNE_UNUSED_PARAMETER(index);
73  return -1;
74  }
75 
76  };
77 
78 #if HAVE_MPI
79  template<typename T, typename T1>
80  class RedistributeInformation<OwnerOverlapCopyCommunication<T,T1> >
81  {
82  public:
83  typedef OwnerOverlapCopyCommunication<T,T1> Comm;
84 
85  RedistributeInformation()
86  : interface(), setup_(false)
87  {}
88 
89  RedistributeInterface& getInterface()
90  {
91  return interface;
92  }
93  template<typename IS>
94  void checkInterface(const IS& source,
95  const IS& target, MPI_Comm comm)
96  {
97  auto ri = std::make_unique<RemoteIndices<IS> >(source, target, comm);
98  ri->template rebuild<true>();
99  Interface inf;
100  typename OwnerOverlapCopyCommunication<int>::OwnerSet flags;
101  int rank;
102  MPI_Comm_rank(MPI_COMM_WORLD, &rank);
103  inf.free();
104  inf.build(*ri, flags, flags);
105 
106 
107 #ifdef DEBUG_REPART
108  if(inf!=interface) {
109 
110  MPI_Comm_rank(MPI_COMM_WORLD, &rank);
111  if(rank==0)
112  std::cout<<"Interfaces do not match!"<<std::endl;
113  std::cout<<rank<<": redist interface new :"<<inf<<std::endl;
114  std::cout<<rank<<": redist interface :"<<interface<<std::endl;
115 
116  throw "autsch!";
117  }
118 #endif
119  }
120  void setSetup()
121  {
122  setup_=true;
123  interface.strip();
124  }
125 
126  void resetSetup()
127  {
128  setup_=false;
129  }
130 
131  template<class GatherScatter, class D>
132  void redistribute(const D& from, D& to) const
133  {
134  BufferedCommunicator communicator;
135  communicator.template build<D>(from,to, interface);
136  communicator.template forward<GatherScatter>(from, to);
137  communicator.free();
138  }
139  template<class GatherScatter, class D>
140  void redistributeBackward(D& from, const D& to) const
141  {
142 
143  BufferedCommunicator communicator;
144  communicator.template build<D>(from,to, interface);
145  communicator.template backward<GatherScatter>(from, to);
146  communicator.free();
147  }
148 
149  template<class D>
150  void redistribute(const D& from, D& to) const
151  {
152  redistribute<CopyGatherScatter<D> >(from,to);
153  }
154  template<class D>
155  void redistributeBackward(D& from, const D& to) const
156  {
157  redistributeBackward<CopyGatherScatter<D> >(from,to);
158  }
159  bool isSetup() const
160  {
161  return setup_;
162  }
163 
164  void reserve(std::size_t size)
165  {}
166 
167  std::size_t& getRowSize(std::size_t index)
168  {
169  return rowSize[index];
170  }
171 
172  std::size_t getRowSize(std::size_t index) const
173  {
174  return rowSize[index];
175  }
176 
177  std::size_t& getCopyRowSize(std::size_t index)
178  {
179  return copyrowSize[index];
180  }
181 
182  std::size_t getCopyRowSize(std::size_t index) const
183  {
184  return copyrowSize[index];
185  }
186 
187  std::size_t& getBackwardsCopyRowSize(std::size_t index)
188  {
189  return backwardscopyrowSize[index];
190  }
191 
192  std::size_t getBackwardsCopyRowSize(std::size_t index) const
193  {
194  return backwardscopyrowSize[index];
195  }
196 
197  void setNoRows(std::size_t rows)
198  {
199  rowSize.resize(rows, 0);
200  }
201 
202  void setNoCopyRows(std::size_t rows)
203  {
204  copyrowSize.resize(rows, 0);
205  }
206 
207  void setNoBackwardsCopyRows(std::size_t rows)
208  {
209  backwardscopyrowSize.resize(rows, 0);
210  }
211 
212  private:
213  std::vector<std::size_t> rowSize;
214  std::vector<std::size_t> copyrowSize;
215  std::vector<std::size_t> backwardscopyrowSize;
216  RedistributeInterface interface;
217  bool setup_;
218  };
219 
228  template<class M, class RI>
230  {
231  // Make the default communication policy work.
232  typedef typename M::size_type value_type;
233  typedef typename M::size_type size_type;
234 
240  CommMatrixRowSize(const M& m_, RI& rowsize_)
241  : matrix(m_), rowsize(rowsize_)
242  {}
243  const M& matrix;
244  RI& rowsize;
245 
246  };
247 
248 
257  template<class M, class I>
259  {
260  typedef typename M::size_type size_type;
261 
268  CommMatrixSparsityPattern(const M& m_, const Dune::GlobalLookupIndexSet<I>& idxset_, const I& aggidxset_)
269  : matrix(m_), idxset(idxset_), aggidxset(aggidxset_), rowsize()
270  {}
271 
279  CommMatrixSparsityPattern(const M& m_, const Dune::GlobalLookupIndexSet<I>& idxset_, const I& aggidxset_,
280  const std::vector<typename M::size_type>& rowsize_)
281  : matrix(m_), idxset(idxset_), aggidxset(aggidxset_), sparsity(aggidxset_.size()), rowsize(&rowsize_)
282  {}
283 
291  {
292  // insert diagonal to overlap rows
293  typedef typename Dune::GlobalLookupIndexSet<I>::const_iterator IIter;
294  typedef typename Dune::OwnerOverlapCopyCommunication<int>::OwnerSet OwnerSet;
295  std::size_t nnz=0;
296 #ifdef DEBUG_REPART
297  int rank;
298 
299  MPI_Comm_rank(MPI_COMM_WORLD, &rank);
300 #endif
301  for(IIter i= aggidxset.begin(), end=aggidxset.end(); i!=end; ++i) {
302  if(!OwnerSet::contains(i->local().attribute())) {
303 #ifdef DEBUG_REPART
304  std::cout<<rank<<" Inserting diagonal for"<<i->local()<<std::endl;
305 #endif
306  sparsity[i->local()].insert(i->local());
307  }
308 
309  nnz+=sparsity[i->local()].size();
310  }
311  assert( aggidxset.size()==sparsity.size());
312 
313  if(nnz>0) {
314  m.setSize(aggidxset.size(), aggidxset.size(), nnz);
315  m.setBuildMode(M::row_wise);
316  typename M::CreateIterator citer=m.createbegin();
317 #ifdef DEBUG_REPART
318  std::size_t idx=0;
319  bool correct=true;
320  Dune::GlobalLookupIndexSet<I> global(aggidxset);
321 #endif
322  typedef typename std::vector<std::set<size_type> >::const_iterator Iter;
323  for(Iter i=sparsity.begin(), end=sparsity.end(); i!=end; ++i, ++citer)
324  {
325  typedef typename std::set<size_type>::const_iterator SIter;
326  for(SIter si=i->begin(), send=i->end(); si!=send; ++si)
327  citer.insert(*si);
328 #ifdef DEBUG_REPART
329  if(i->find(idx)==i->end()) {
330  const typename I::IndexPair* gi=global.pair(idx);
331  assert(gi);
332  std::cout<<rank<<": row "<<idx<<" is missing a diagonal entry! global="<<gi->global()<<" attr="<<gi->local().attribute()<<" "<<
333  OwnerSet::contains(gi->local().attribute())<<
334  " row size="<<i->size()<<std::endl;
335  correct=false;
336  }
337  ++idx;
338 #endif
339  }
340 #ifdef DEBUG_REPART
341  if(!correct)
342  throw "bla";
343 #endif
344  }
345  }
346 
354  void completeSparsityPattern(std::vector<std::set<size_type> > add_sparsity)
355  {
356  for (unsigned int i = 0; i != sparsity.size(); ++i) {
357  if (add_sparsity[i].size() != 0) {
358  typedef std::set<size_type> Set;
359  Set tmp_set;
360  std::insert_iterator<Set> tmp_insert (tmp_set, tmp_set.begin());
361  std::set_union(add_sparsity[i].begin(), add_sparsity[i].end(),
362  sparsity[i].begin(), sparsity[i].end(), tmp_insert);
363  sparsity[i].swap(tmp_set);
364  }
365  }
366  }
367 
368  const M& matrix;
369  typedef Dune::GlobalLookupIndexSet<I> LookupIndexSet;
370  const Dune::GlobalLookupIndexSet<I>& idxset;
371  const I& aggidxset;
372  std::vector<std::set<size_type> > sparsity;
373  const std::vector<size_type>* rowsize;
374  };
375 
376  template<class M, class I>
377  struct CommPolicy<CommMatrixSparsityPattern<M,I> >
378  {
379  typedef CommMatrixSparsityPattern<M,I> Type;
380 
385  typedef typename I::GlobalIndex IndexedType;
386 
388  typedef VariableSize IndexedTypeFlag;
389 
390  static typename M::size_type getSize(const Type& t, std::size_t i)
391  {
392  if(!t.rowsize)
393  return t.matrix[i].size();
394  else
395  {
396  assert((*t.rowsize)[i]>0);
397  return (*t.rowsize)[i];
398  }
399  }
400  };
401 
408  template<class M, class I>
410  {
419  CommMatrixRow(M& m_, const Dune::GlobalLookupIndexSet<I>& idxset_, const I& aggidxset_)
420  : matrix(m_), idxset(idxset_), aggidxset(aggidxset_), rowsize()
421  {}
422 
426  CommMatrixRow(M& m_, const Dune::GlobalLookupIndexSet<I>& idxset_, const I& aggidxset_,
427  std::vector<size_t>& rowsize_)
428  : matrix(m_), idxset(idxset_), aggidxset(aggidxset_), rowsize(&rowsize_)
429  {}
436  {
437  typedef typename Dune::GlobalLookupIndexSet<I>::const_iterator Iter;
438  typedef typename Dune::OwnerOverlapCopyCommunication<int>::OwnerSet OwnerSet;
439 
440  for(Iter i= aggidxset.begin(), end=aggidxset.end(); i!=end; ++i)
441  if(!OwnerSet::contains(i->local().attribute())) {
442  // Set to Dirchlet
443  typedef typename M::ColIterator CIter;
444  for(CIter c=matrix[i->local()].begin(), cend= matrix[i->local()].end();
445  c!= cend; ++c)
446  {
447  *c=0;
448  if(c.index()==i->local()) {
449  auto setDiagonal = [](auto&& scalarOrMatrix, const auto& value) {
450  auto&& matrix = Dune::Impl::asMatrix(scalarOrMatrix);
451  for (auto rowIt = matrix.begin(); rowIt != matrix.end(); ++rowIt)
452  (*rowIt)[rowIt.index()] = value;
453  };
454  setDiagonal(*c, 1);
455  }
456  }
457  }
458  }
460  M& matrix;
464  const I& aggidxset;
466  std::vector<size_t>* rowsize; // row sizes differ from sender side in overlap!
467  };
468 
469  template<class M, class I>
470  struct CommPolicy<CommMatrixRow<M,I> >
471  {
472  typedef CommMatrixRow<M,I> Type;
473 
478  typedef std::pair<typename I::GlobalIndex,typename M::block_type> IndexedType;
479 
482 
483  static std::size_t getSize(const Type& t, std::size_t i)
484  {
485  if(!t.rowsize)
486  return t.matrix[i].size();
487  else
488  {
489  assert((*t.rowsize)[i]>0);
490  return (*t.rowsize)[i];
491  }
492  }
493  };
494 
495  template<class M, class I, class RI>
496  struct MatrixRowSizeGatherScatter
497  {
498  typedef CommMatrixRowSize<M,RI> Container;
499 
500  static const typename M::size_type gather(const Container& cont, std::size_t i)
501  {
502  return cont.matrix[i].size();
503  }
504  static void scatter(Container& cont, const typename M::size_type& rowsize, std::size_t i)
505  {
506  assert(rowsize);
507  cont.rowsize.getRowSize(i)=rowsize;
508  }
509 
510  };
511 
512  template<class M, class I, class RI>
513  struct MatrixCopyRowSizeGatherScatter
514  {
515  typedef CommMatrixRowSize<M,RI> Container;
516 
517  static const typename M::size_type gather(const Container& cont, std::size_t i)
518  {
519  return cont.matrix[i].size();
520  }
521  static void scatter(Container& cont, const typename M::size_type& rowsize, std::size_t i)
522  {
523  assert(rowsize);
524  if (rowsize > cont.rowsize.getCopyRowSize(i))
525  cont.rowsize.getCopyRowSize(i)=rowsize;
526  }
527 
528  };
529 
530  template<class M, class I>
531  struct MatrixSparsityPatternGatherScatter
532  {
533  typedef typename I::GlobalIndex GlobalIndex;
534  typedef CommMatrixSparsityPattern<M,I> Container;
535  typedef typename M::ConstColIterator ColIter;
536 
537  static ColIter col;
538  static GlobalIndex numlimits;
539 
540  static const GlobalIndex& gather(const Container& cont, std::size_t i, std::size_t j)
541  {
542  if(j==0)
543  col=cont.matrix[i].begin();
544  else if (col!=cont.matrix[i].end())
545  ++col;
546 
547  //copy communication: different row sizes for copy rows with the same global index
548  //are possible. If all values of current matrix row are sent, send
549  //std::numeric_limits<GlobalIndex>::max()
550  //and receiver will ignore it.
551  if (col==cont.matrix[i].end()) {
553  return numlimits;
554  }
555  else {
556  const typename I::IndexPair* index=cont.idxset.pair(col.index());
557  assert(index);
558  // Only send index if col is no ghost
559  if ( index->local().attribute() != 2)
560  return index->global();
561  else {
563  return numlimits;
564  }
565  }
566  }
567  static void scatter(Container& cont, const GlobalIndex& gi, std::size_t i, std::size_t j)
568  {
570  try{
572  const typename I::IndexPair& ip=cont.aggidxset.at(gi);
573  assert(ip.global()==gi);
574  std::size_t column = ip.local();
575  cont.sparsity[i].insert(column);
576 
577  typedef typename Dune::OwnerOverlapCopyCommunication<int>::OwnerSet OwnerSet;
578  if(!OwnerSet::contains(ip.local().attribute()))
579  // preserve symmetry for overlap
580  cont.sparsity[column].insert(i);
581  }
582  }
583  catch(const Dune::RangeError&) {
584  // Entry not present in the new index set. Ignore!
585 #ifdef DEBUG_REPART
586  typedef typename Container::LookupIndexSet GlobalLookup;
587  typedef typename GlobalLookup::IndexPair IndexPair;
588  typedef typename Dune::OwnerOverlapCopyCommunication<int>::OwnerSet OwnerSet;
589 
590  GlobalLookup lookup(cont.aggidxset);
591  const IndexPair* pi=lookup.pair(i);
592  assert(pi);
593  if(OwnerSet::contains(pi->local().attribute())) {
594  int rank;
595  MPI_Comm_rank(MPI_COMM_WORLD,&rank);
596  std::cout<<rank<<cont.aggidxset<<std::endl;
597  std::cout<<rank<<": row "<<i<<" (global="<<gi <<") not in index set for owner index "<<pi->global()<<std::endl;
598  throw;
599  }
600 #endif
601  }
602  }
603 
604  };
605  template<class M, class I>
606  typename MatrixSparsityPatternGatherScatter<M,I>::ColIter MatrixSparsityPatternGatherScatter<M,I>::col;
607 
608  template<class M, class I>
609  typename MatrixSparsityPatternGatherScatter<M,I>::GlobalIndex MatrixSparsityPatternGatherScatter<M,I>::numlimits;
610 
611 
612  template<class M, class I>
613  struct MatrixRowGatherScatter
614  {
615  typedef typename I::GlobalIndex GlobalIndex;
616  typedef CommMatrixRow<M,I> Container;
617  typedef typename M::ConstColIterator ColIter;
618  typedef typename std::pair<GlobalIndex,typename M::block_type> Data;
619  static ColIter col;
620  static Data datastore;
621  static GlobalIndex numlimits;
622 
623  static const Data& gather(const Container& cont, std::size_t i, std::size_t j)
624  {
625  if(j==0)
626  col=cont.matrix[i].begin();
627  else if (col!=cont.matrix[i].end())
628  ++col;
629  // copy communication: different row sizes for copy rows with the same global index
630  // are possible. If all values of current matrix row are sent, send
631  // std::numeric_limits<GlobalIndex>::max()
632  // and receiver will ignore it.
633  if (col==cont.matrix[i].end()) {
635  datastore = std::make_pair(numlimits,*col);
636  return datastore;
637  }
638  else {
639  // convert local column index to global index
640  const typename I::IndexPair* index=cont.idxset.pair(col.index());
641  assert(index);
642  // Store the data to prevent reference to temporary
643  // Only send index if col is no ghost
644  if ( index->local().attribute() != 2)
645  datastore = std::make_pair(index->global(),*col);
646  else {
648  datastore = std::make_pair(numlimits,*col);
649  }
650  return datastore;
651  }
652  }
653  static void scatter(Container& cont, const Data& data, std::size_t i, std::size_t j)
654  {
656  try{
657  if (data.first != std::numeric_limits<GlobalIndex>::max()) {
658  typename M::size_type column=cont.aggidxset.at(data.first).local();
659  cont.matrix[i][column]=data.second;
660  }
661  }
662  catch(const Dune::RangeError&) {
663  // This an overlap row and might therefore lack some entries!
664  }
665 
666  }
667  };
668 
669  template<class M, class I>
670  typename MatrixRowGatherScatter<M,I>::ColIter MatrixRowGatherScatter<M,I>::col;
671 
672  template<class M, class I>
673  typename MatrixRowGatherScatter<M,I>::Data MatrixRowGatherScatter<M,I>::datastore;
674 
675  template<class M, class I>
676  typename MatrixRowGatherScatter<M,I>::GlobalIndex MatrixRowGatherScatter<M,I>::numlimits;
677 
678  template<typename M, typename C>
679  void redistributeSparsityPattern(M& origMatrix, M& newMatrix, C& origComm, C& newComm,
680  RedistributeInformation<C>& ri)
681  {
682  typename C::CopySet copyflags;
683  typename C::OwnerSet ownerflags;
684  typedef typename C::ParallelIndexSet IndexSet;
685  typedef RedistributeInformation<C> RI;
686  std::vector<typename M::size_type> rowsize(newComm.indexSet().size(), 0);
687  std::vector<typename M::size_type> copyrowsize(newComm.indexSet().size(), 0);
688  std::vector<typename M::size_type> backwardscopyrowsize(origComm.indexSet().size(), 0);
689 
690  // get owner rowsizes
691  CommMatrixRowSize<M,RI> commRowSize(origMatrix, ri);
692  ri.template redistribute<MatrixRowSizeGatherScatter<M,IndexSet,RI> >(commRowSize,commRowSize);
693 
694  origComm.buildGlobalLookup();
695 
696  for (std::size_t i=0; i < newComm.indexSet().size(); i++) {
697  rowsize[i] = ri.getRowSize(i);
698  }
699  // get sparsity pattern from owner rows
700  CommMatrixSparsityPattern<M,IndexSet>
701  origsp(origMatrix, origComm.globalLookup(), newComm.indexSet());
702  CommMatrixSparsityPattern<M,IndexSet>
703  newsp(origMatrix, origComm.globalLookup(), newComm.indexSet(), rowsize);
704 
705  ri.template redistribute<MatrixSparsityPatternGatherScatter<M,IndexSet> >(origsp,newsp);
706 
707  // build copy to owner interface to get missing matrix values for novlp case
709  RemoteIndices<IndexSet> *ris = new RemoteIndices<IndexSet>(origComm.indexSet(),
710  newComm.indexSet(),
711  origComm.communicator());
712  ris->template rebuild<true>();
713 
714  ri.getInterface().free();
715  ri.getInterface().build(*ris,copyflags,ownerflags);
716 
717  // get copy rowsizes
718  CommMatrixRowSize<M,RI> commRowSize_copy(origMatrix, ri);
719  ri.template redistribute<MatrixCopyRowSizeGatherScatter<M,IndexSet,RI> >(commRowSize_copy,
720  commRowSize_copy);
721 
722  for (std::size_t i=0; i < newComm.indexSet().size(); i++) {
723  copyrowsize[i] = ri.getCopyRowSize(i);
724  }
725  //get copy rowsizes for sender
726  ri.redistributeBackward(backwardscopyrowsize,copyrowsize);
727  for (std::size_t i=0; i < origComm.indexSet().size(); i++) {
728  ri.getBackwardsCopyRowSize(i) = backwardscopyrowsize[i];
729  }
730 
731  // get sparsity pattern from copy rows
732  CommMatrixSparsityPattern<M,IndexSet> origsp_copy(origMatrix,
733  origComm.globalLookup(),
734  newComm.indexSet(),
735  backwardscopyrowsize);
736  CommMatrixSparsityPattern<M,IndexSet> newsp_copy(origMatrix, origComm.globalLookup(),
737  newComm.indexSet(), copyrowsize);
738  ri.template redistribute<MatrixSparsityPatternGatherScatter<M,IndexSet> >(origsp_copy,
739  newsp_copy);
740 
741  newsp.completeSparsityPattern(newsp_copy.sparsity);
742  newsp.storeSparsityPattern(newMatrix);
743  }
744  else
745  newsp.storeSparsityPattern(newMatrix);
746 
747 #ifdef DUNE_ISTL_WITH_CHECKING
748  // Check for symmetry
749  int ret=0;
750  typedef typename M::ConstRowIterator RIter;
751  for(RIter row=newMatrix.begin(), rend=newMatrix.end(); row != rend; ++row) {
752  typedef typename M::ConstColIterator CIter;
753  for(CIter col=row->begin(), cend=row->end(); col!=cend; ++col)
754  {
755  try{
756  newMatrix[col.index()][row.index()];
757  }catch(const Dune::ISTLError&) {
758  std::cerr<<newComm.communicator().rank()<<": entry ("
759  <<col.index()<<","<<row.index()<<") missing! for symmetry!"<<std::endl;
760  ret=1;
761 
762  }
763 
764  }
765  }
766 
767  if(ret)
768  DUNE_THROW(ISTLError, "Matrix not symmetric!");
769 #endif
770  }
771 
772  template<typename M, typename C>
773  void redistributeMatrixEntries(M& origMatrix, M& newMatrix, C& origComm, C& newComm,
774  RedistributeInformation<C>& ri)
775  {
776  typedef typename C::ParallelIndexSet IndexSet;
777  typename C::OwnerSet ownerflags;
778  std::vector<typename M::size_type> rowsize(newComm.indexSet().size(), 0);
779  std::vector<typename M::size_type> copyrowsize(newComm.indexSet().size(), 0);
780  std::vector<typename M::size_type> backwardscopyrowsize(origComm.indexSet().size(), 0);
781 
782  for (std::size_t i=0; i < newComm.indexSet().size(); i++) {
783  rowsize[i] = ri.getRowSize(i);
785  copyrowsize[i] = ri.getCopyRowSize(i);
786  }
787  }
788 
789  for (std::size_t i=0; i < origComm.indexSet().size(); i++)
791  backwardscopyrowsize[i] = ri.getBackwardsCopyRowSize(i);
792 
793 
795  // fill sparsity pattern from copy rows
796  CommMatrixRow<M,IndexSet> origrow_copy(origMatrix, origComm.globalLookup(),
797  newComm.indexSet(), backwardscopyrowsize);
798  CommMatrixRow<M,IndexSet> newrow_copy(newMatrix, origComm.globalLookup(),
799  newComm.indexSet(),copyrowsize);
800  ri.template redistribute<MatrixRowGatherScatter<M,IndexSet> >(origrow_copy,
801  newrow_copy);
802  ri.getInterface().free();
803  RemoteIndices<IndexSet> *ris = new RemoteIndices<IndexSet>(origComm.indexSet(),
804  newComm.indexSet(),
805  origComm.communicator());
806  ris->template rebuild<true>();
807  ri.getInterface().build(*ris,ownerflags,ownerflags);
808  }
809 
810  CommMatrixRow<M,IndexSet>
811  origrow(origMatrix, origComm.globalLookup(), newComm.indexSet());
812  CommMatrixRow<M,IndexSet>
813  newrow(newMatrix, origComm.globalLookup(), newComm.indexSet(),rowsize);
814  ri.template redistribute<MatrixRowGatherScatter<M,IndexSet> >(origrow,newrow);
815  if (SolverCategory::category(origComm) != static_cast<int>(SolverCategory::nonoverlapping))
816  newrow.setOverlapRowsToDirichlet();
817  }
818 
835  template<typename M, typename C>
836  void redistributeMatrix(M& origMatrix, M& newMatrix, C& origComm, C& newComm,
837  RedistributeInformation<C>& ri)
838  {
839  ri.setNoRows(newComm.indexSet().size());
840  ri.setNoCopyRows(newComm.indexSet().size());
841  ri.setNoBackwardsCopyRows(origComm.indexSet().size());
842  redistributeSparsityPattern(origMatrix, newMatrix, origComm, newComm, ri);
843  redistributeMatrixEntries(origMatrix, newMatrix, origComm, newComm, ri);
844  }
845 #endif
846 
847 template<typename M>
848  void redistributeMatrixEntries(M& origMatrix, M& newMatrix,
849  Dune::Amg::SequentialInformation& origComm,
850  Dune::Amg::SequentialInformation& newComm,
851  RedistributeInformation<Dune::Amg::SequentialInformation>& ri)
852  {
853  DUNE_THROW(InvalidStateException, "Trying to redistribute in sequential program!");
854  }
855  template<typename M>
856  void redistributeMatrix(M& origMatrix, M& newMatrix,
857  Dune::Amg::SequentialInformation& origComm,
858  Dune::Amg::SequentialInformation& newComm,
859  RedistributeInformation<Dune::Amg::SequentialInformation>& ri)
860  {
861  DUNE_THROW(InvalidStateException, "Trying to redistribute in sequential program!");
862  }
863 }
864 #endif
A constant random access iterator for the Dune::ArrayList class.
Definition: arraylist.hh:377
A set consisting only of one item.
Definition: enumset.hh:60
Decorates an index set with the possibility to find a global index that is mapped to a specific local...
Definition: indexset.hh:508
derive error class from the base class in common
Definition: istlexception.hh:16
Default exception class for range errors.
Definition: exceptions.hh:252
A few common exception classes.
const IndexPair * pair(const std::size_t &local) const
Get the index pair corresponding to a local index.
#define DUNE_UNUSED_PARAMETER(parm)
A macro to mark intentionally unused function parameters with.
Definition: unused.hh:25
#define DUNE_THROW(E, m)
Definition: exceptions.hh:216
auto max(ADLTag< 0 >, const V &v1, const V &v2)
implements binary Simd::max()
Definition: defaults.hh:79
Provides a map between global and local indices.
Dune namespace.
Definition: alignedallocator.hh:14
void redistributeMatrix(M &origMatrix, M &newMatrix, C &origComm, C &newComm, RedistributeInformation< C > &ri)
Redistribute a matrix according to given domain decompositions.
Definition: matrixredistribute.hh:836
Classes providing communication interfaces for overlapping Schwarz methods.
Functionality for redistributing a parallel index set using graph partitioning.
Utility class to communicate and set the row sizes of a redistributed matrix.
Definition: matrixredistribute.hh:230
CommMatrixRowSize(const M &m_, RI &rowsize_)
Constructor.
Definition: matrixredistribute.hh:240
Utility class for comunicating the matrix entries.
Definition: matrixredistribute.hh:410
std::vector< size_t > * rowsize
row size information for the receiving side.
Definition: matrixredistribute.hh:466
M & matrix
The matrix to communicate the values of.
Definition: matrixredistribute.hh:460
CommMatrixRow(M &m_, const Dune::GlobalLookupIndexSet< I > &idxset_, const I &aggidxset_, std::vector< size_t > &rowsize_)
Constructor.
Definition: matrixredistribute.hh:426
const Dune::GlobalLookupIndexSet< I > & idxset
Index set for the original matrix.
Definition: matrixredistribute.hh:462
void setOverlapRowsToDirichlet()
Sets the non-owner rows correctly as Dirichlet boundaries.
Definition: matrixredistribute.hh:435
const I & aggidxset
Index set for the redistributed matrix.
Definition: matrixredistribute.hh:464
CommMatrixRow(M &m_, const Dune::GlobalLookupIndexSet< I > &idxset_, const I &aggidxset_)
Constructor.
Definition: matrixredistribute.hh:419
Utility class to communicate and build the sparsity pattern of a redistributed matrix.
Definition: matrixredistribute.hh:259
void storeSparsityPattern(M &m)
Creates and stores the sparsity pattern of the redistributed matrix.
Definition: matrixredistribute.hh:290
void completeSparsityPattern(std::vector< std::set< size_type > > add_sparsity)
Completes the sparsity pattern of the redistributed matrix with data from copy rows for the novlp cas...
Definition: matrixredistribute.hh:354
CommMatrixSparsityPattern(const M &m_, const Dune::GlobalLookupIndexSet< I > &idxset_, const I &aggidxset_)
Constructor for the original side.
Definition: matrixredistribute.hh:268
CommMatrixSparsityPattern(const M &m_, const Dune::GlobalLookupIndexSet< I > &idxset_, const I &aggidxset_, const std::vector< typename M::size_type > &rowsize_)
Constructor for the redistruted side.
Definition: matrixredistribute.hh:279
Default policy used for communicating an indexed type.
Definition: communicator.hh:127
V::value_type IndexedType
The type we get at each index with operator[].
Definition: communicator.hh:146
static int getSize(const V &, int index)
Get the number of primitve elements at that index.
SizeOne IndexedTypeFlag
Whether the indexed type has variable size or there is always one value at each index.
Definition: communicator.hh:152
V Type
The type the policy is for.
Definition: communicator.hh:139
@ nonoverlapping
Category for non-overlapping solvers.
Definition: solvercategory.hh:25
static Category category(const OP &op, decltype(op.category()) *=nullptr)
Helperfunction to extract the solver category either from an enum, or from the newly introduced virtu...
Definition: solvercategory.hh:32
Flag for marking indexed data structures where the data at each index may be a variable multiple of a...
Definition: communicator.hh:117
Definition of the DUNE_UNUSED macro for the case that config.h is not available.
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