parallelhelper.hh

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// -*- tab-width: 8; indent-tabs-mode: nil; c-basic-offset: 2 -*-
// vi: set et ts=8 sw=2 sts=2:
#ifndef DUNE_PDELAB_BACKEND_ISTL_PARALLELHELPER_HH
#define DUNE_PDELAB_BACKEND_ISTL_PARALLELHELPER_HH
 
#include <limits>
 
#include <dune/common/parallel/mpihelper.hh>
#include <dune/common/stdstreams.hh>
#include <dune/common/typetraits.hh>
 
#if HAVE_DUNE_UGGRID && PDELAB_SEQUENTIAL_UG
// We need the UGGrid declaration for the assertion
#include <dune/grid/uggrid.hh>
#endif
 
#include <dune/istl/owneroverlapcopy.hh>
#include <dune/istl/solvercategory.hh>
#include <dune/istl/operators.hh>
#include <dune/istl/solvers.hh>
#include <dune/istl/preconditioners.hh>
#include <dune/istl/scalarproducts.hh>
#include <dune/istl/paamg/amg.hh>
#include <dune/istl/paamg/pinfo.hh>
#include <dune/istl/io.hh>
#include <dune/istl/superlu.hh>
 
#include <dune/pdelab/constraints/common/constraints.hh>
#include <dune/pdelab/gridfunctionspace/genericdatahandle.hh>
#include <dune/pdelab/backend/interface.hh>
#include <dune/pdelab/backend/istl/vector.hh>
#include <dune/pdelab/backend/istl/utility.hh>
#include <dune/pdelab/gridfunctionspace/tags.hh>
 
namespace Dune {
  namespace PDELab {
    namespace ISTL {
 
 
 
      //========================================================
      // A parallel helper class providing a nonoverlapping
      // decomposition of all degrees of freedom
      //========================================================
 
      template<typename GFS>
      class ParallelHelper
      {
 
        typedef int RankIndex;
 
        using RankVector = Dune::PDELab::Backend::Vector<GFS,RankIndex>;
        using GhostVector = Dune::PDELab::Backend::Vector<GFS,bool>;
 
        typedef typename GFS::Ordering::Traits::ContainerIndex ContainerIndex;
 
      public:
 
        ParallelHelper (const GFS& gfs, int verbose = 1)
          : _gfs(gfs)
          , _rank(gfs.gridView().comm().rank())
          , _rank_partition(gfs,_rank)
          , _ghosts(gfs,false)
          , _verbose(verbose)
        {
 
          // Let's try to be clever and reduce the communication overhead by picking the smallest
          // possible communication interface depending on the overlap structure of the GFS.
          // FIXME: Switch to simple comparison as soon as dune-grid:1b3e83ec0 is reliably available!
          if (gfs.entitySet().partitions().value == Partitions::interiorBorder.value)
            {
              // The GFS only spans the interior and border partitions, so we can skip sending or
              // receiving anything else.
              _interiorBorder_all_interface = InteriorBorder_InteriorBorder_Interface;
              _all_all_interface = InteriorBorder_InteriorBorder_Interface;
            }
          else
            {
              // In general, we have to transmit more.
              _interiorBorder_all_interface = InteriorBorder_All_Interface;
              _all_all_interface = All_All_Interface;
            }
 
          if (_gfs.gridView().comm().size()>1)
            {
 
              // find out about ghosts
              //GFSDataHandle<GFS,GhostVector,GhostGatherScatter>
              GhostDataHandle<GFS,GhostVector>
                gdh(_gfs,_ghosts,false);
              _gfs.gridView().communicate(gdh,_interiorBorder_all_interface,Dune::ForwardCommunication);
 
              // create disjoint DOF partitioning
              //            GFSDataHandle<GFS,RankVector,DisjointPartitioningGatherScatter<RankIndex> >
              //  ibdh(_gfs,_rank_partition,DisjointPartitioningGatherScatter<RankIndex>(_rank));
              DisjointPartitioningDataHandle<GFS,RankVector> pdh(_gfs,_rank_partition);
              _gfs.gridView().communicate(pdh,_interiorBorder_all_interface,Dune::ForwardCommunication);
 
            }
 
          // Generate list of neighbors' ranks
          std::set<RankIndex> rank_set;
          for (RankIndex rank : _rank_partition)
            if (rank != _rank)
              rank_set.insert(rank);
 
          for (RankIndex rank : rank_set)
            _neighbor_ranks.push_back(rank);
        }
 
        const std::vector<RankIndex>& getNeighborRanks() const
        {
          return _neighbor_ranks;
        }
 
        template<typename X>
        void maskForeignDOFs(X& x) const
        {
          using Backend::native;
          // dispatch to implementation.
          maskForeignDOFs(ISTL::container_tag(native(x)),native(x),native(_rank_partition));
        }
 
      private:
 
        // Implementation for block vector; recursively masks blocks.
        template<typename X, typename Mask>
        void maskForeignDOFs(ISTL::tags::block_vector, X& x, const Mask& mask) const
        {
          typename Mask::const_iterator mask_it = mask.begin();
          for (typename X::iterator it = x.begin(),
                 end_it = x.end();
               it != end_it;
               ++it, ++mask_it)
            maskForeignDOFs(ISTL::container_tag(*it),*it,*mask_it);
        }
 
        // Implementation for field vector, iterates over entries and masks them individually.
        template<typename X, typename Mask>
        void maskForeignDOFs(ISTL::tags::field_vector, X& x, const Mask& mask) const
        {
          typename Mask::const_iterator mask_it = mask.begin();
          for (typename X::iterator it = x.begin(),
                 end_it = x.end();
               it != end_it;
               ++it, ++mask_it)
            *it = (*mask_it == _rank ? *it : typename X::field_type(0));
        }
 
      public:
 
        bool owned(const ContainerIndex& i) const
        {
          return _rank_partition[i] == _rank;
        }
 
        bool isGhost(const ContainerIndex& i) const
        {
          return _ghosts[i];
        }
 
        template<typename X, typename Y>
        typename PromotionTraits<
          typename X::field_type,
          typename Y::field_type
          >::PromotedType
        disjointDot(const X& x, const Y& y) const
        {
          using Backend::native;
          return disjointDot(ISTL::container_tag(native(x)),
                             native(x),
                             native(y),
                             native(_rank_partition)
                             );
        }
 
      private:
 
        // Implementation for BlockVector, collects the result of recursively
        // invoking the algorithm on the vector blocks.
        template<typename X, typename Y, typename Mask>
        typename PromotionTraits<
        typename X::field_type,
        typename Y::field_type
        >::PromotedType
        disjointDot(ISTL::tags::block_vector, const X& x, const Y& y, const Mask& mask) const
        {
          typedef typename PromotionTraits<
            typename X::field_type,
            typename Y::field_type
            >::PromotedType result_type;
 
          result_type r(0);
 
          typename Y::const_iterator y_it = y.begin();
          typename Mask::const_iterator mask_it = mask.begin();
          for (typename X::const_iterator x_it = x.begin(),
                 end_it = x.end();
               x_it != end_it;
               ++x_it, ++y_it,  ++mask_it)
            r += disjointDot(ISTL::container_tag(*x_it),*x_it,*y_it,*mask_it);
 
          return r;
        }
 
        // Implementation for FieldVector, iterates over the entries and calls Dune::dot() for DOFs
        // associated with the current rank.
        template<typename X, typename Y, typename Mask>
        typename PromotionTraits<
          typename X::field_type,
          typename Y::field_type
          >::PromotedType
        disjointDot(ISTL::tags::field_vector, const X& x, const Y& y, const Mask& mask) const
        {
          typedef typename PromotionTraits<
            typename X::field_type,
            typename Y::field_type
            >::PromotedType result_type;
 
          result_type r(0);
 
          typename Y::const_iterator y_it = y.begin();
          typename Mask::const_iterator mask_it = mask.begin();
          for (typename X::const_iterator x_it = x.begin(),
                 end_it = x.end();
               x_it != end_it;
               ++x_it, ++y_it, ++mask_it)
            r += (*mask_it == _rank ? Dune::dot(*x_it,*y_it) : result_type(0));
 
          return r;
        }
 
      public:
 
        RankIndex rank() const
        {
          return _rank;
        }
 
#if HAVE_MPI
 
 
        template<typename MatrixType, typename Comm>
        void createIndexSetAndProjectForAMG(MatrixType& m, Comm& c);
 
      private:
 
        // Checks whether a matrix block is owned by the current process. Used for the AMG
        // construction and thus assumes a single level of blocking and blocks with ownership
        // restricted to a single DOF.
        bool owned_for_amg(std::size_t i) const
        {
          return Backend::native(_rank_partition)[i][0] == _rank;
        }
 
#endif // HAVE_MPI
 
      private:
 
        const GFS& _gfs;
        const RankIndex _rank;
        RankVector _rank_partition; // vector to identify unique decomposition
        std::vector<RankIndex> _neighbor_ranks; // list of neighbors' ranks
        GhostVector _ghosts; //vector to identify ghost dofs
        int _verbose; //verbosity
 
        InterfaceType _interiorBorder_all_interface;
 
        InterfaceType _all_all_interface;
      };
 
#if HAVE_MPI
 
      template<typename GFS>
      template<typename M, typename C>
      void ParallelHelper<GFS>::createIndexSetAndProjectForAMG(M& m, C& c)
      {
 
        using Backend::native;
 
        const bool is_bcrs_matrix =
          std::is_same<
            typename ISTL::tags::container<
              Backend::Native<M>
              >::type::base_tag,
          ISTL::tags::bcrs_matrix
          >::value;
 
        const bool block_type_is_field_matrix =
          std::is_same<
            typename ISTL::tags::container<
              typename Backend::Native<M>::block_type
              >::type::base_tag,
          ISTL::tags::field_matrix
          >::value;
 
        // We assume M to be a BCRSMatrix in the following, so better check for that
        static_assert(is_bcrs_matrix && block_type_is_field_matrix, "matrix structure not compatible with AMG");
 
        // ********************************************************************************
        // In the following, the code will always assume that all DOFs stored in a single
        // block of the BCRSMatrix are attached to the same entity and can be handled
        // identically. For that reason, the code often restricts itself to inspecting the
        // first entry of the blocks in the diverse BlockVectors.
        // ********************************************************************************
 
        typedef typename GFS::Traits::GridViewType GV;
        typedef typename RankVector::size_type size_type;
        const GV& gv = _gfs.gridView();
 
        // Do we need to communicate at all?
        const bool need_communication = _gfs.gridView().comm().size() > 1;
 
        // First find out which dofs we share with other processors
        using BoolVector = Backend::Vector<GFS,bool>;
        BoolVector sharedDOF(_gfs, false);
 
        if (need_communication)
          {
            SharedDOFDataHandle<GFS,BoolVector> data_handle(_gfs,sharedDOF,false);
            _gfs.gridView().communicate(data_handle,_all_all_interface,Dune::ForwardCommunication);
          }
 
        // Count shared dofs that we own
        typedef typename C::ParallelIndexSet::GlobalIndex GlobalIndex;
        GlobalIndex count = 0;
 
        for (size_type i = 0; i < sharedDOF.N(); ++i)
          if (owned_for_amg(i) && native(sharedDOF)[i][0])
            ++count;
 
        dverb << gv.comm().rank() << ": shared block count is " << count.touint() << std::endl;
 
        // Communicate per-rank count of owned and shared DOFs to all processes.
        std::vector<GlobalIndex> counts(_gfs.gridView().comm().size());
        _gfs.gridView().comm().allgather(&count, 1, &(counts[0]));
 
        // Compute start index start_p = \sum_{i=0}^{i<p} counts_i
        GlobalIndex start = std::accumulate(counts.begin(),counts.begin() + _rank,GlobalIndex(0));
 
        using GIVector = Dune::PDELab::Backend::Vector<GFS,GlobalIndex>;
        GIVector scalarIndices(_gfs, std::numeric_limits<GlobalIndex>::max());
 
        for (size_type i = 0; i < sharedDOF.N(); ++i)
          if (owned_for_amg(i) && native(sharedDOF)[i][0])
            {
              native(scalarIndices)[i][0] = start;
              ++start;
            }
 
        // Publish global indices for the shared DOFS to other processors.
        if (need_communication)
          {
            MinDataHandle<GFS,GIVector> data_handle(_gfs,scalarIndices);
            _gfs.gridView().communicate(data_handle,_interiorBorder_all_interface,Dune::ForwardCommunication);
          }
 
        // Setup the index set
        c.indexSet().beginResize();
        for (size_type i=0; i<scalarIndices.N(); ++i)
          {
            Dune::OwnerOverlapCopyAttributeSet::AttributeSet attr;
            if(native(scalarIndices)[i][0] != std::numeric_limits<GlobalIndex>::max())
              {
                // global index exist in index set
                if (owned_for_amg(i))
                  {
                    // This dof is managed by us.
                    attr = Dune::OwnerOverlapCopyAttributeSet::owner;
                  }
                else
                  {
                    attr = Dune::OwnerOverlapCopyAttributeSet::copy;
                  }
                c.indexSet().add(native(scalarIndices)[i][0], typename C::ParallelIndexSet::LocalIndex(i,attr));
              }
          }
        c.indexSet().endResize();
 
        // Compute neighbors using communication
        std::set<int> neighbors;
 
        if (need_communication)
          {
            GFSNeighborDataHandle<GFS,int> data_handle(_gfs,_rank,neighbors);
            _gfs.gridView().communicate(data_handle,_all_all_interface,Dune::ForwardCommunication);
          }
 
        c.remoteIndices().setNeighbours(neighbors);
        c.remoteIndices().template rebuild<false>();
      }
 
#endif // HAVE_MPI
 
      template<int s, bool isFakeMPIHelper>
      struct CommSelector
      {
        typedef Dune::Amg::SequentialInformation type;
      };
 
 
#if HAVE_MPI
 
      // Need MPI for OwnerOverlapCopyCommunication
      template<int s>
      struct CommSelector<s,false>
      {
        typedef OwnerOverlapCopyCommunication<bigunsignedint<s>,int> type;
      };
 
#endif // HAVE_MPI
 
      template<typename T>
      void assertParallelUG(T comm)
      {}
 
#if HAVE_DUNE_UGGRID && PDELAB_SEQUENTIAL_UG
      template<int dim>
      void assertParallelUG(Dune::CollectiveCommunication<Dune::UGGrid<dim> > comm)
      {
        static_assert(Dune::AlwaysFalse<Dune::UGGrid<dim> >::value, "Using sequential UG in parallel environment");
      };
#endif
 
    } // namespace ISTL
  } // namespace PDELab
} // namespace Dune
 
#endif // DUNE_PDELAB_BACKEND_ISTL_PARALLELHELPER_HH