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bcrsmatrix.hh
Go to the documentation of this file.
1// SPDX-FileCopyrightText: Copyright © DUNE Project contributors, see file LICENSE.md in module root
175 DUNE_THROW(BCRSMatrixError,"You can only create an ImplicitBuilder for a matrix in implicit build mode");
177 DUNE_THROW(BCRSMatrixError,"You can only create an ImplicitBuilder for a matrix with set size that has not been compressed() yet");
195 ImplicitMatrixBuilder(Matrix& m, size_type rows, size_type cols, size_type avg_cols_per_row, double overflow_fraction)
199 DUNE_THROW(BCRSMatrixError,"You can only set up a matrix for this ImplicitBuilder if it has no memory allocated yet");
484 };
550 DUNE_THROW(BCRSMatrixError,"You cannot use operator[] in implicit build mode before calling compress()");
562 DUNE_THROW(BCRSMatrixError,"You cannot use operator[] in implicit build mode before calling compress()");
809 DUNE_THROW(InvalidStateException,"BCRSMatrix can only be copy-constructed when source matrix is completely empty (size not set) or fully built)");
838 if (ready == building && (build_mode == unknown || build_mode == random || build_mode == row_wise) && (bm == row_wise || bm == random))
841 DUNE_THROW(InvalidStateException, "Matrix structure cannot be changed at this stage anymore (ready == "<<ready<<").");
867 DUNE_THROW(Dune::BCRSMatrixError,"number of non-zeroes may not be set in implicit mode, use setImplicitBuildModeParameters() instead");
898 DUNE_THROW(InvalidStateException,"You cannot modify build mode parameters at this stage anymore");
914 if (!((ready == notAllocated || ready == built) && (Mat.ready == notAllocated || Mat.ready == built)))
915 DUNE_THROW(InvalidStateException,"BCRSMatrix can only be copied when both target and source are empty or fully built)");
968 DUNE_THROW(BCRSMatrixError,"creation only allowed if row wise allocation was requested in the constructor");
1290 dwarn << "WARNING: size of row "<< i.index()<<" is "<<j.offset()<<". But was specified as being "<< (*i).end().offset()
1291 <<". This means you are wasting valuable space and creating additional cache misses!"<<std::endl;
1393 DUNE_THROW(InvalidStateException,"You may only call compress() at the end of the 'building' stage");
1425 std::sort(perm.begin(),perm.end(), [](const size_type* l, const size_type* r){ return *l < *r; });
1440 "Please increase either the average number of entries per row or the compressionBufferSize value."
1455 "Please increase either the average number of entries per row or the compressionBufferSize value."
1520 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1548 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1581 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1603 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1628 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1648 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1674 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1697 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1720 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1743 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1758 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1802 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1825 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1848 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1871 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1896 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1919 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1939 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1959 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
1982 DUNE_THROW(BCRSMatrixError,"You can only call arithmetic operations on fully built BCRSMatrix instances");
2065 size_type allocationSize_; //allocated size of a and j arrays, except in implicit mode: nnz_==allocationsSize_
2238 void allocate(size_type rows, size_type columns, size_type allocationSize, bool allocateRows, bool allocate_data)
2250 DUNE_THROW(InvalidStateException,"Rows have already been allocated, cannot allocate a second time");
2301 DUNE_THROW(InvalidStateException,"implicit_allocate() may only be called in implicit build mode");
2307 DUNE_THROW(InvalidStateException,"You have to set the implicit build mode parameters before starting to build the matrix");
Some handy generic functions for ISTL matrices.
Helper functions for determining the vector/matrix block level.
This file implements a vector space as a tensor product of a given vector space. The number of compon...
T & dereference() const
void decrement()
int size() const
reference elementAt(size_type i) const
void increment()
void advance(difference_type n)
void construct(pointer p, const_reference value)
void * allocate()
void destroy(pointer p)
#define DUNE_THROW(E,...)
const_iterator find(int proc) const
DWarnType dwarn
constexpr auto get(std::integer_sequence< T, II... >, std::integral_constant< std::size_t, pos >={})
T real_type
Definition matrixutils.hh:211
Statistics about compression achieved in implicit mode.
Definition bcrsmatrix.hh:89
size_type overflow_total
total number of elements written to the overflow area during construction.
Definition bcrsmatrix.hh:95
size_type maximum
maximum number of non-zeroes per row.
Definition bcrsmatrix.hh:93
double avg
average number of non-zeroes per row.
Definition bcrsmatrix.hh:91
double mem_ratio
fraction of wasted memory resulting from non-used overflow area.
Definition bcrsmatrix.hh:100
A wrapper for uniform access to the BCRSMatrix during and after the build stage in implicit build mod...
Definition bcrsmatrix.hh:118
Matrix::block_type block_type
The block_type of the underlying matrix.
Definition bcrsmatrix.hh:126
ImplicitMatrixBuilder(Matrix &m)
Creates an ImplicitMatrixBuilder for matrix m.
Definition bcrsmatrix.hh:171
ImplicitMatrixBuilder(Matrix &m, size_type rows, size_type cols, size_type avg_cols_per_row, double overflow_fraction)
Sets up matrix m for implicit construction using the given parameters and creates an ImplicitBmatrixu...
Definition bcrsmatrix.hh:195
size_type M() const
The number of columns in the matrix.
Definition bcrsmatrix.hh:218
Matrix::size_type size_type
The size_type of the underlying matrix.
Definition bcrsmatrix.hh:129
row_object operator[](size_type i) const
Returns a proxy for entries in row i.
Definition bcrsmatrix.hh:206
size_type N() const
The number of rows in the matrix.
Definition bcrsmatrix.hh:212
Proxy row object for entry access.
Definition bcrsmatrix.hh:138
block_type & operator[](size_type j) const
Returns entry in column j.
Definition bcrsmatrix.hh:143
typename Imp::BlockTraits< B >::field_type field_type
export the type representing the field
Definition bcrsmatrix.hh:489
std::allocator_traits< A >::template rebind_alloc< row_type > rowAllocator_
Definition bcrsmatrix.hh:2057
bool exists(size_type i, size_type j) const
return true if (i,j) is in pattern
Definition bcrsmatrix.hh:2039
BuildStage buildStage() const
The current build stage of the matrix.
Definition bcrsmatrix.hh:2025
void copyWindowStructure(const BCRSMatrix &Mat)
Copy the window structure from another matrix.
Definition bcrsmatrix.hh:2154
B & entry(size_type row, size_type col)
Returns reference to entry (row,col) of the matrix.
Definition bcrsmatrix.hh:1320
void usmhv(const field_type &alpha, const X &x, Y &y) const
y += alpha A^H x
Definition bcrsmatrix.hh:1867
RealRowIterator< const row_type > const_iterator
The const iterator over the matrix rows.
Definition bcrsmatrix.hh:704
void allocate(size_type rows, size_type columns, size_type allocationSize, bool allocateRows, bool allocate_data)
Allocate memory for the matrix structure.
Definition bcrsmatrix.hh:2238
BCRSMatrix & axpy(field_type alpha, const BCRSMatrix &b)
Add the scaled entries of another matrix to this one.
Definition bcrsmatrix.hh:1624
FieldTraits< ft >::real_type infinity_norm_real() const
simplified infinity norm (uses Manhattan norm for complex values)
Definition bcrsmatrix.hh:1937
void deallocate(bool deallocateRows=true)
deallocate memory of the matrix.
Definition bcrsmatrix.hh:2171
Iterator RowIterator
rename the iterators for easier access
Definition bcrsmatrix.hh:698
row_type & operator[](size_type i)
random access to the rows
Definition bcrsmatrix.hh:546
void endrowsizes()
indicate that size of all rows is defined
Definition bcrsmatrix.hh:1149
void incrementrowsize(size_type i, size_type s=1)
increment size of row i by s (1 by default)
Definition bcrsmatrix.hh:1138
size_type nonzeroes() const
number of blocks that are stored (the number of blocks that possibly are nonzero)
Definition bcrsmatrix.hh:2016
ConstIterator ConstRowIterator
rename the const row iterator for easier access
Definition bcrsmatrix.hh:735
void setIndicesNoSort(size_type row, It begin, It end)
Set all column indices for row from the given iterator range.
Definition bcrsmatrix.hh:1235
void setrowsize(size_type i, size_type s)
Set number of indices in row i to s.
Definition bcrsmatrix.hh:1117
BCRSMatrix & operator*=(const field_type &k)
vector space multiplication with scalar
Definition bcrsmatrix.hh:1516
std::allocator_traits< A >::template rebind_alloc< size_type > sizeAllocator_
Definition bcrsmatrix.hh:2059
RealRowIterator< row_type > iterator
The iterator over the (mutable matrix rows.
Definition bcrsmatrix.hh:668
void usmtv(const field_type &alpha, const X &x, Y &y) const
y += alpha A^T x
Definition bcrsmatrix.hh:1798
RealRowIterator< const row_type > ConstIterator
Definition bcrsmatrix.hh:705
@ implicit
Build entries randomly with an educated guess for the number of entries per row.
Definition bcrsmatrix.hh:536
BCRSMatrix(size_type _n, size_type _m, size_type _nnz, BuildMode bm)
matrix with known number of nonzeroes
Definition bcrsmatrix.hh:753
Imp::CompressedBlockVectorWindow< B, size_type > row_type
implement row_type with compressed vector
Definition bcrsmatrix.hh:501
::Dune::CompressionStatistics< size_type > CompressionStatistics
The type for the statistics object returned by compress()
Definition bcrsmatrix.hh:504
BCRSMatrix & operator-=(const BCRSMatrix &b)
Subtract the entries of another matrix from this one.
Definition bcrsmatrix.hh:1599
BCRSMatrix(const BCRSMatrix &Mat)
copy constructor
Definition bcrsmatrix.hh:803
void setIndices(size_type row, It begin, It end)
Set all column indices for row from the given iterator range.
Definition bcrsmatrix.hh:1258
void addindex(size_type row, size_type col)
add index (row,col) to the matrix
Definition bcrsmatrix.hh:1191
std::map< std::pair< size_type, size_type >, B > OverflowType
Definition bcrsmatrix.hh:2081
row_type::Iterator ColIterator
Iterator for the entries of each row.
Definition bcrsmatrix.hh:701
FieldTraits< field_type >::real_type frobenius_norm() const
frobenius norm: sqrt(sum over squared values of entries)
Definition bcrsmatrix.hh:1909
A::size_type size_type
The type for the index access and the size.
Definition bcrsmatrix.hh:498
BCRSMatrix & operator/=(const field_type &k)
vector space division by scalar
Definition bcrsmatrix.hh:1544
BCRSMatrix & operator+=(const BCRSMatrix &b)
Add the entries of another matrix to this one.
Definition bcrsmatrix.hh:1577
BCRSMatrix(size_type _n, size_type _m, size_type _avg, double compressionBufferSize, BuildMode bm)
construct matrix with a known average number of entries per row
Definition bcrsmatrix.hh:782
CreateIterator createend()
get create iterator pointing to one after the last block
Definition bcrsmatrix.hh:1103
FieldTraits< field_type >::real_type frobenius_norm2() const
square of frobenius norm, need for block recursion
Definition bcrsmatrix.hh:1892
row_type::ConstIterator ConstColIterator
Const iterator to the entries of a row.
Definition bcrsmatrix.hh:738
void usmv(F &&alpha, const X &x, Y &y) const
y += alpha A x
Definition bcrsmatrix.hh:1716
size_type getrowsize(size_type i) const
get current number of indices in row i
Definition bcrsmatrix.hh:1128
size_type M() const
number of columns (counted in blocks)
Definition bcrsmatrix.hh:2010
CreateIterator createbegin()
get initial create iterator
Definition bcrsmatrix.hh:1097
@ rowSizesBuilt
The row sizes of the matrix are known.
Definition bcrsmatrix.hh:481
@ notbuilt
Matrix is not built at all, no memory has been allocated, build mode and size can still be set.
Definition bcrsmatrix.hh:472
@ notAllocated
Matrix is not built at all, no memory has been allocated, build mode and size can still be set.
Definition bcrsmatrix.hh:474
@ building
Matrix is currently being built, some memory has been allocated, build mode and size are fixed.
Definition bcrsmatrix.hh:476
BuildMode buildMode() const
The currently selected build mode of the matrix.
Definition bcrsmatrix.hh:2031
FieldTraits< ft >::real_type infinity_norm() const
infinity norm (row sum norm, how to generalize for blocks?)
Definition bcrsmatrix.hh:1917
B block_type
export the type representing the components
Definition bcrsmatrix.hh:492
void implicit_allocate(size_type _n, size_type _m)
organizes allocation implicit mode calculates correct array size to be allocated and sets the the win...
Definition bcrsmatrix.hh:2298
void setImplicitBuildModeParameters(size_type _avg, double compressionBufferSize)
Set parameters needed for creation in implicit build mode.
Definition bcrsmatrix.hh:887
BCRSMatrix(size_type _n, size_type _m, BuildMode bm)
matrix with unknown number of nonzeroes
Definition bcrsmatrix.hh:762
void endindices()
indicate that all indices are defined, check consistency
Definition bcrsmatrix.hh:1272
CompressionStatistics compress()
Finishes the buildstage in implicit mode.
Definition bcrsmatrix.hh:1384
void setDataPointers()
Set data pointers for all rows.
Definition bcrsmatrix.hh:2135
std::allocator_traits< A >::template rebind_alloc< B > allocator_
Definition bcrsmatrix.hh:2055
size_type N() const
number of rows (counted in blocks)
Definition bcrsmatrix.hh:2004
void setBuildMode(BuildMode bm)
Sets the build mode of the matrix.
Definition bcrsmatrix.hh:831
void setSize(size_type rows, size_type columns, size_type nnz=0)
Set the size of the matrix.
Definition bcrsmatrix.hh:859
void setWindowPointers(ConstRowIterator row)
Definition bcrsmatrix.hh:2084
BCRSMatrix & operator=(const BCRSMatrix &Mat)
assignment
Definition bcrsmatrix.hh:909
void setColumnPointers(ConstRowIterator row)
Copy row sizes from iterator range starting at row and set column index pointers for all rows.
Definition bcrsmatrix.hh:2109
ConstIterator end() const
Get const iterator to one beyond last row.
Definition bcrsmatrix.hh:715
ConstIterator begin() const
Get const iterator to first row.
Definition bcrsmatrix.hh:709
A allocator_type
export the allocator type
Definition bcrsmatrix.hh:495
RealRowIterator()
empty constructor, use with care!
Definition bcrsmatrix.hh:593
bool equals(const RealRowIterator< ValueType > &other) const
equality
Definition bcrsmatrix.hh:621
std::remove_const< T >::type ValueType
The unqualified value type.
Definition bcrsmatrix.hh:580
RealRowIterator(const RealRowIterator< ValueType > &it)
Definition bcrsmatrix.hh:597
bool equals(const RealRowIterator< const ValueType > &other) const
equality
Definition bcrsmatrix.hh:628
RealRowIterator(row_type *_p, size_type _i)
constructor
Definition bcrsmatrix.hh:588
std::ptrdiff_t distanceTo(const RealRowIterator< const ValueType > &other) const
Definition bcrsmatrix.hh:614
size_type index() const
return index
Definition bcrsmatrix.hh:603
std::ptrdiff_t distanceTo(const RealRowIterator< ValueType > &other) const
Definition bcrsmatrix.hh:608
Iterator class for sequential creation of blocks
Definition bcrsmatrix.hh:955
bool operator==(const CreateIterator &it) const
equality
Definition bcrsmatrix.hh:1052
CreateIterator & operator++()
prefix increment
Definition bcrsmatrix.hh:975
size_type index() const
The number of the row that the iterator currently points to.
Definition bcrsmatrix.hh:1058
bool operator!=(const CreateIterator &it) const
inequality
Definition bcrsmatrix.hh:1046
CreateIterator(BCRSMatrix &_Mat, size_type _i)
constructor
Definition bcrsmatrix.hh:958
void insert(size_type j)
put column index in row
Definition bcrsmatrix.hh:1064
bool contains(size_type j)
return true if column index is in row
Definition bcrsmatrix.hh:1070
size_type size() const
Get the current row size.
Definition bcrsmatrix.hh:1079
typename BCRSMatrix< B, A >::field_type field_type
Definition bcrsmatrix.hh:2332
typename FieldTraits< field_type >::real_type real_type
Definition bcrsmatrix.hh:2333
Thrown when the compression buffer used by the implicit BCRSMatrix construction is exhausted.
Definition istlexception.hh:37
T block_type
Export the type representing the components.
Definition matrix.hh:568
T accumulate(T... args)
T allocate(T... args)
T begin(T... args)
T clear(T... args)
T copy_backward(T... args)
T copy(T... args)
T deallocate(T... args)
T end(T... args)
T endl(T... args)
T find(T... args)
T get(T... args)
T lower_bound(T... args)
T make_pair(T... args)
T max(T... args)
T reset(T... args)
T resize(T... args)
T size(T... args)
T sort(T... args)
T visit(T... args)
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