gmshgridfactory.hh

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// -*- tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 2 -*-
// vi: set et ts=4 sw=2 sts=2:
#ifndef DUNE_MMESH_GRID_GMSHGRIDFACTORY_HH
#define DUNE_MMESH_GRID_GMSHGRIDFACTORY_HH
 
// System includes
#include <memory>
#include <utility>
#include <vector>
 
// Dune includes
#include <dune/grid/common/intersection.hh>
 
// MMesh includes
#include <dune/mmesh/grid/explicitgridfactory.hh>
#include <dune/mmesh/grid/implicitgridfactory.hh>
 
namespace Dune {
 
// External Forward Declarations
// -----------------------------
template <class GridImp, class IntersectionImp>
class Intersection;
 
// GmshGridFactory for MMesh
// ------------------------
template <class Grid, bool useImplicitGridFactory = false>
struct GmshGridFactory {
  const static int dimension = Grid::dimension;
  typedef MPIHelper::MPICommunicator MPICommunicatorType;
  typedef typename Grid::template Codim<0>::Entity Element;
  typedef typename Grid::template Codim<dimension>::Entity Vertex;
  typedef typename Grid::FieldType FieldType;
  typedef FieldVector<FieldType, dimension> GlobalPosition;
 
  // Choose explicit or implicit grid factory
  typedef std::conditional_t<useImplicitGridFactory,
                             MMeshImplicitGridFactory<Grid>,
                             MMeshExplicitGridFactory<Grid> >
      GridFactory;
 
  explicit GmshGridFactory(std::istream &input) {
    input.clear();
    input.seekg(0);
    if (!input) DUNE_THROW(DGFException, "Error resetting input stream.");
    generate(input);
  }
 
  explicit GmshGridFactory(const std::string &filename) {
    factory_ = new GridFactory();
    std::ifstream input(filename.c_str());
    if (!input)
      DUNE_THROW(DGFException, "Macrofile " << filename << " not found.");
    if (!generate(input))
      DUNE_THROW(DGFException,
                 "Could not generate MMesh from macrofile " << filename);
    input.close();
  }
 
  explicit GmshGridFactory(Dune::GridFactory<Grid> &gridFactory,
                           const std::string &filename) {
    factory_ = &gridFactory;
    std::ifstream input(filename.c_str());
    if (!input)
      DUNE_THROW(DGFException, "Macrofile " << filename << " not found.");
    if (!generate(input))
      DUNE_THROW(DGFException,
                 "Could not generate MMesh from macrofile " << filename);
    input.close();
  }
 
  std::shared_ptr<Grid> grid() const {
    if (!grid_) grid_ = factory_->createGrid();
 
    return grid_;
  }
 
  template <class Intersection>
  bool wasInserted(const Intersection &intersection) const {
    return factory_->wasInserted(intersection);
  }
 
 private:
  bool generate(std::istream &gridFile) {
    // read file until we get to the list of nodes
    std::string line;
    std::getline(gridFile, line);
    while (line.find("$Nodes") == std::string::npos) {
      if (!std::getline(gridFile, line))
        DUNE_THROW(IOError, "Gmsh file not valid!");
    }
 
    // read all vertices
    std::getline(gridFile, line);
    const auto numVertices = convertString<std::size_t>(line);
 
    std::getline(gridFile, line);
    std::size_t vertexCount = 0;
    while (line.find("$EndNodes") == std::string::npos) {
      // drop first entry in line (vertex index) and read coordinates
      std::istringstream stream(line);
      std::string buf;
      stream >> buf;
      GlobalPosition v;
      for (auto &coord : v) {
        stream >> coord;
        if (stream.fail())
          DUNE_THROW(Dune::IOError, "Could not read vertex coordinate");
      }
 
      // insert vertex and move to next line
      factory_->insertVertex(v);
      if (!std::getline(gridFile, line))
        DUNE_THROW(IOError, "Gmsh file not valid!");
      vertexCount++;
    }
 
    // we should always find as many vertices as the mesh file states
    if (vertexCount != numVertices)
      DUNE_THROW(Dune::InvalidStateException,
                 "Couldn't find as many vertices as stated in the .msh file");
 
    // read file until we get to the list of elements
    while (line.find("$Elements") == std::string::npos)
      if (!std::getline(gridFile, line))
        DUNE_THROW(IOError, "Gmsh file not valid!");
 
    // read elements
    std::getline(gridFile, line);
    const auto numElements = convertString<std::size_t>(line);
 
    std::size_t elemCount = 0;
    std::getline(gridFile, line);
    while (line.find("$EndElements") == std::string::npos) {
      // pass all indices into vector
      std::istringstream stream(line);
      std::string buf;
      std::vector<std::size_t> lineData;
      while (stream >> buf) lineData.push_back(convertString<std::size_t>(buf));
      assert(lineData.size() >= 4 && "Grid format erroneous or unsupported");
 
      // obtain geometry type
      const auto gt = obtainGeometryType(lineData[1]);
 
      std::vector<unsigned int> cornersIndices;
      auto it = lineData.begin() + 2 + lineData[2] + 1;
      for (; it != lineData.end(); ++it)
        cornersIndices.push_back(*it - 1);  // gmsh indices start from 1
 
      // insert element
      if (gt.dim() == dimension)
        factory_->insertElement(gt, cornersIndices, lineData[2 + lineData[2]]);
 
      // insert interface/boundary segments
      if (gt.dim() == dimension - 1) {
        factory_->insertInterface(cornersIndices, lineData[2 + lineData[2]]);
        factory_->insertBoundarySegment(cornersIndices);
      }
 
      // insert interface's boundary segments
      if (gt.dim() == dimension - 2)
        factory_->insertInterfaceBoundarySegment(cornersIndices);
 
      // get next line
      if (!std::getline(gridFile, line))
        DUNE_THROW(IOError, "Gmsh file not valid!");
      elemCount++;
    }
 
    // make sure we read all elements
    if (elemCount != numElements)
      DUNE_THROW(Dune::InvalidStateException,
                 "Didn't read as many elements as stated in the .msh file");
 
    return true;
  }
 
 private:
  template <class T>
  T convertString(const std::string &string) const {
    T value;
    std::istringstream stream(string);
    stream >> value;
    if (stream.fail())
      DUNE_THROW(Dune::InvalidStateException,
                 "Couldn't convert string: " << string << "to type: "
                                             << typeid(T).name());
    return value;
  }
 
  Dune::GeometryType obtainGeometryType(std::size_t gmshElemType) const {
    switch (gmshElemType) {
      case 15:
        return Dune::GeometryTypes::vertex;  // points
      case 1:
        return Dune::GeometryTypes::line;  // lines
      case 2:
        return Dune::GeometryTypes::triangle;  // triangle
      case 3:
        return Dune::GeometryTypes::quadrilateral;  // quadrilateral
      case 4:
        return Dune::GeometryTypes::tetrahedron;  // tetrahedron
      case 5:
        return Dune::GeometryTypes::hexahedron;  // hexahedron
      default:
        DUNE_THROW(
            Dune::NotImplemented,
            "FacetCoupling gmsh reader for gmsh element type " << gmshElemType);
    }
  }
 
  mutable std::shared_ptr<Grid> grid_;
  GridFactory *factory_;
};
 
}  // end namespace Dune
 
#endif